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Nomenclatural standards and genetic passports of potato cultivars bred by the Tatar Research Institute of Agriculture «Kazan Scientific Center of the Russian Academy of Sciences»

https://doi.org/10.30901/2658-6266-2020-3-o4

Abstract

Breeding of potato cultivars adapted to the climatic conditions of the Middle Volga region and resistant to various harmful organisms has always been an urgent task for breeders of the Tatarstan Republic. In the present paper, the potato cultivars bred at the Tatar Research Institute of Agriculture – Kazan Scientific Center of the Russian Academy of Sciences, were taken as an example for demonstrating the results of application and elaboration of methodological approaches that are currently developed at the N.I. Vavilov Institute of Plant Genetic Resources (VIR) for the preparing of nomenclatural standards and their genotyping. At the initiative of the VIR researchers in collaboration with the authors of potato cultivars E.A. Gimaeva and Z. Stashevski plant material was collected and nomenclatural standards for potato cultivars bred at the Kazan Scientific Center of the Russian Academy of Sciences were prepared. Four nomenclatural standards for Tatarstan potato cultivars (‘Zumba’, ‘Kortni’, ‘Reggi’, ‘Samba’) were prepared in accordance with the provisions of the International Code of Nomenclature For Cultivated Plants, registered in the VIR Herbarium Database, and transferred to the VIR herbarium type collection. Besides, voucher specimens of cv. ‘Tango’ and breeding clone ‘Sal’sa’, which is undergoing the State Variety Test at present, were produced. Genetic passports of Tatarstan varieties (‘Zumba’, ‘Kortni’, ‘Reggi’, ‘Samba’) and one breeding clone (‘Sal’sa’)* were developed using DNA samples from plant material transferred by the authors of the cultivars to the VIR herbarium. The genetic passports include information of the polymorphism of eight chromosome-specific microsatellites, data on the presence/ absence of the diagnostic fragments of 15 markers of the 11 R-genes conferring resistance to various harmful organisms and the information about cytoplasm types. A comparison of the data from genetic passports developed using DNA samples from nomenclatural standard specimens with the results of genotyping of 22 samples of Tatarstan cultivars obtained from different sources (e.g., samples undergoing ecogeographic tests within the framework of the Comprehensive Research Plan of the subprogram “Development of potato breeding and seed production in the Russian Federation”; as well as accessions from the VIR in vitro collection) made it possible to assess the authenticity and uniformity of the studied plant material.

About the Authors

N. A. Fomina
N. I. Vavilov All-Russian Institute of Plant Genetic Resources (VIR)
Russian Federation

42, 44 Bolshaya Morskaya Street, St. Petersburg 190000



O. Yu. Antonova
N. I. Vavilov All-Russian Institute of Plant Genetic Resources (VIR)
Russian Federation

42, 44 Bolshaya Morskaya Street, St. Petersburg 190000



I. G. Chukhina
N. I. Vavilov All-Russian Institute of Plant Genetic Resources (VIR)
Russian Federation

42, 44 Bolshaya Morskaya Street, St. Petersburg 190000



E. A. Gimaeva
Tatar Research Institute of Agriculture – Subdivision of the Federal Research Center «Kazan Scientific Center of Russian Academy of Sciences» (FRC KazSC of RAS)
Russian Federation

48, Orenburgskiy tract, Kazan 420059



Z. Stashevski
Tatar Research Institute of Agriculture – Subdivision of the Federal Research Center «Kazan Scientific Center of Russian Academy of Sciences» (FRC KazSC of RAS)
Russian Federation

48, Orenburgskiy tract, Kazan 420059



T. A. Gavrilenko
N. I. Vavilov All-Russian Institute of Plant Genetic Resources (VIR)
Russian Federation

42, 44 Bolshaya Morskaya Street, St. Petersburg 190000



References

1. Ahmadvand R., Wolf I., Gorji A.M., Polgár Z., Taller J. Development of Molecular Tools for Distinguishing Between the Highly Similar Rx1 and Rx2 PVX Extreme Resistance Genes in Tetraploid Potato. Potato Research. 2013;56(4):277-291. DOI: 10.1007/s11540-013-9244-y

2. Antonova O.Y., Klimenko N.S., Evdokimova Z.Z., Kostina L.I., Gavrilenko T.A. Finding RB/Rpi-blb1/Rpi-sto1-like sequences in conventionally bred potato varieties. Vavilov Journal of Genetics and Breeding. 2018;22(6):693-702. DOI: 10.18699/VJ18.412

3. Asano K., Kobayashi A., Tsuda S., Nishinaka M., Tamiya S. DNA marker-assisted evaluation of potato genotypes for potential resistance to potato cyst nematode pathotypes not yet invading into Japan. Breeding Science. 2012;62(2):142-150. DOI: 10.1270/jsbbs.62.142

4. Ballvora A., Ercolano M.R., Weiss J., Meksem K., Bormann C.A., Oberhagemann P., Salamini F., Gebhardt C. The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes. The Plant Journal. 2002;30(3):361-371. DOI: 10.1046/j.1365-313X.2001.01292.x

5. Belozor N.I. Herbarization of cultivated plants (Guidelines) (Gerbarizatsiya kulturnykh rastenii (Metodicheskie ukazaniya)). Leningrad: VIR; 1989. [in Russian]

6. Brickell C.D., Alexander C., Cubey J.J., David J.C., Hoffman M.H.A., Leslie A.C., Malécot V., Xiaobai J. (eds). International code of nomenclature for cultivated plants. Ed. 9. Scripta Horticulturae. 2016;18:I-XVII+1-190.

7. Feingold S., Lloyd J., Norero N., Bonierbale M., Lorenzen J. Mapping and characterization of new EST-derived microsatellites for potato (Solanum tuberosum L.). Theoretical and Applied Genetics. 2005;111:456-466. DOI: 10.1007/s00122-005-2028-2

8. Flis B., Hennig J., Strzelczyk-Zyta D., Gebhardt C., Marczewski W. The Ry-fsto gene from Solanum stoloniferum for extreme resistant to Potato virus Y maps to potato chromosome XII and is diagnosed by PCR marker GP122718 in PVY resistant potato cultivars. Molecular Breeding. 2005;15:95-101.

9. Gavrilenko T.А., Аfanasenko O.S., Аntonova O.YU., Rogozina E.V., Khyutti А.V., Shuvalov O.YU., Islamshina А.R., Chalaya N.А. Development of technology for assessing the genetic diversity of cultivated and wild potato species for resistance to viral diseases and canker based on modern molecular genetic and phytopathological methods (Razrabotka tekhnologii otsenki geneticheskogo raznoobraziya kul'turnykh i dikikh vidov kartofelya po ustojchivosti k virusnym zabolevaniyam i k raku na osnove sovremennykh molekulyarno-geneticheskikh i fitopatologicheskikh metodov). In: Materials of the conference «Oriented fundamental research and their implementation in the agro-industrial complex of Russia» (Materialy konferentsii «Orientirovannye fundamentalnye issledovaniya i ikh realizatsiya v АPK Rossii») Sergiev Posad; 2009. p.94-100. [in Russian] URL: http://vir.nw.ru/biot/pdf/conf-text.pdf [дата обращения: 24.09.2020].

10. Gavrilenko T., Antonova O., Shuvalova A., Krylova E., Alpatyeva N., Spooner D.M., Novikova L. Genetic diversity and origin of cultivated potatoes based on plastid microsatellite polymorphism. Genetic Resources and Crop Evolution. 2013;60(7):1997-2015. DOI: 10.1007/s10722-013-9968-1

11. Gavrilenko Т.А., Klimenko N.S., Alpatieva N.V., Kostina L.I., Lebedeva V.A., Evdokimova Z.Z., Apalikova O.V., Novikova L.Y., Antonova O.Yu. Cytoplasmic genetic diversity of potato varieties bred in Russia and FSU countries. Vavilov Journal of Genetics and Breeding. 2019;23(6):753-764. DOI: 10.18699/VJ19.534

12. Gavrilenko Т.А., Klimenko N.S., Antonova O.Yu., Lebedeva V.A., Evdokimova Z.Z., Gadjiyev N.M., Apalikova O.V., Alpatyeva N.V., Kostina L.I., Zoteyeva N.M., Mamadbokirova F.T., Egorova K.V. Molecular screening of potato varieties bred in the northwestern zone of the Russian Federation. Vavilov Journal of Genetics and Breeding. 2018;22(1):35-45. [in Russian] DOI: 10.18699/VJ18.329

13. Ghislain M., Nunez J., Herera M. del R., Pignataro J., Guzman F., Bonierbale M., Spooner D.M. Robust and highly informative microsatellite-based genetic identity kit for potato. Molecular Breeding. 2009;23:377-388. DOI: 10.1007/s11032-008-9240-0

14. Hosaka K., Sanetomo R. Development of a rapid identification method for potato cytoplasm and its use for evaluating Japanese collections. Theoretical and Applied Genetics. 2012;125(6):1237-1251. DOI: 10.1007/s00122-012-1909-4

15. Huang S., van der Vossen E.A.G., Kuang H., Vleeshouwers V. G.A.A., Zhang N., Borm T.J.A., van Eck H.J., Baker B., Jacobsen E., Visser R.G.F. Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato. The Plant Journal. 2005;42(2):251-261. DOI: 10.1111/j.1365-313X.2005.02365.x

16. Il'in S.A., Blagoveshchenskij N.I. Potatoes in Tataria (Kartofel v Tatarii). Kazan: Tat. book publishing house; 1970. [in Russian]

17. Kasai K., Morikawa Y., Sorri V.A., Valkonen J.P.T., Gebhardt C., Watanabe K.N. Development of SCAR markers to the PVY resistance gene Ryadg based on a common feature of plant disease resistance genes. Genome. 2000;43(1):1-8. DOI: 10.1139/g99-092

18. Klimenko N.S., Antonova O.Y., Kostina L.I., Mamadbokirova F.T., Gavrilenko T.A. Marker-associated selection of Russian potato varieties with using markers of resistance genes to the golden potato cyst nematode (pathotype Ro1). Proceedings on applied botany, genetics and breeding. 2017;178(4):66-75. [in Russian] DOI: 10.30901/2227-8834-2017-4-66-75

19. Klimenko N.S., Antonova O.Yu.,. Zheltova V.V, Fomina N.A., Kostina L.I., Mamadbokirova F.T., Gavrilenko T.A. Screening of Russian potato cultivars (Solanum tuberosum L.) with DNA markers linked to the genes conferring extreme resistance to Potato Virus Y. Agricultural Biology. 2019;54(5):958-969 [in Russian]. DOI: 10.15389/agrobiology.2019.5.958rus

20. Kuzminova O.А., Vologin S.G., Stashevski Z., Gimaeva E.А. Marker assisted selection of potatoes for resistance to virus Y, Globodera rostochiensis Woll. and Synchytrium endobioticum (Schilb.) Percival (Markyor-vspomogatelnaya selektsiya kartofelya na ustojchivost k virusu Y, Globodera rostochiensis Woll. i Synchytrium endobioticum (Schilb.) Percival). Zashhita kartofelya = Potato protection. 2014а;(1):14-15. [in Russian]

21. Kuzminova O.А., Stashevski Z., Vologin S.G., Gimaeva E.А. Search for sources of economically valuable potato traits using molecular genetic analysis (Poisk istochnikov khozyajstvenno-tsennykh priznakov kartofelya pri pomoshhi molekulyarno-geneticheskogo analiza) In: Modern potato industry: state and development prospects: materials of the VI interregional scientific-practical. conf. (Sovremennaya industriya kartofelya: sostoyanie i perspektivy razvitiya: mat-ly VI mezhregionalnoj nauch.-prakt. konf.). Cheboksary; 2014b. p.50-55.

22. Milbourne D., Meyer R.C., Collins A.J., Ramsay L.D., Gebhardt C., Waugh R. Isolation, characterisation and mapping of simple sequence repeat loci in potato. Molecular and General Genetics. 1998;259:233-245. DOI: 10.1007/s004380050809

23. Schultz L., Cogan N., McLean K., Dale M., Bryan G., Forster J., Slater A. Evaluation and implementation of a potential diagnostic molecular marker for H1-conferred potato cyst nematode resistance in potato (Solanum tuberosum L.). Plant Breeding. 2012;131(2):315-321. DOI: 10.1111/j.1439-0523.2012.01949.x

24. Song Y.-S., Schwarzfischer A. Development of STS Markers for Selection of Extreme Resistance (Rysto) to PVY and Maternal Pedigree Analysis of Extremely Resistant Cultivars. American Journal of Potato Research. 2008;85(2):159-170. DOI: 10.1007/s12230-008-9012-8

25. State Register for Selection Achievements Admitted for Usage. 2020. [in Russian] URL: https://reestr.gossortrf.ru/ [дата обращения: 24.09.2020].

26. Stashevski Z., Gimaeva E.A., Vologin S.G., Salihova Z.Z., Gizatullina A.T., Safiullina G.F., Nazmieva R.R., Zamalieva F.F. New stress-resistant potato varieties (Novye stessoustojchivye sorta kartofelya). In: Sorta i tekhnologii vozdelyvaniya kartofelya v sovremennyh usloviyah: materialy XIX innovacionnogo soveta NIU Urala, Zapadnoj Sibiri, Povolzhya i Severnogo Kazahstana po kartofelevodstvu = Varieties and technologies of potato cultivation in modern conditions: Proceedings of the XIX Innovation Council of the National Research University of the Urals, Western Siberia, the Volga region and Northern Kazakhstan on potato growing. 2013. p.88-93 [in Russian]

27. Stashevski Z., Kuzminova O.A., Vologin S.G., Gizatullina A.T., Gimayeva Ye.A., Safiullina G.F., Kiru S.D., Shabanov A.E., Safonova A.D., Polukhin N.I., Zhuravleva Ye.V. First Results of Ecological and Geographical Testing of New Russian Potato Varieties. Zemledelije. 2019;6:43-48. [in Russian] DOI: 10.24411/0044-3913-2019-10610

28. Takeuchi, T., Sasaki J., Suzuki T., Horita H., Hiura S., Iketani S., Fujita R., Senda K. DNA markers for efficient selection of disease and pests resistance genes in potato [in Japanese]. Hokkaido Nogyo-Shiken-Kaigi-Shiryo 2008. 2009:1-26.

29. Wang M., Allefs A., van den Berg R.G., Vleeshouwers V.G.A.A., van der Vossen E., Vosman B. Allele mining in Solanum: conserved homologues of Rpi-blb1 are identified in Solanum stoloniferum. Theoretical and Applied Genetics. 2008;116(7):933-943. DOI: 10.1007/s00122-008-0725-3

30. Valkonen J., Wiegmann K., Hämäläinen J., Marczewaski W., Watanabe K. Evidence for utility of the same PCR-base markers for selection of extreme resistance to potato virus Y controlled by Rysto of Solanum stoloniferum derived from different sources. Annals of Applied Biology. 2008;152:121-130. DOI: 10.1111/j.1744-7348.2007.00194.x

31. Zamalieva F.F. Control of potato virus diseases. (Borba s virusnymi boleznyami kartofelya). Zashchita i karantin rastenij = Plant protection and quarantine. 2013;3:17-21 [in Russian]

32. Zhu S., Li Y., Vossen J.H., Visser R.G.F., Jacobsen E. Functional stacking of three resistance genes against Phytophthora infestans in potato. Transgenic Research. 2012;21(1):89-99. DOI: 10.1007/s11248-011- 9510-1


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Fomina N.A., Antonova O.Yu., Chukhina I.G., Gimaeva E.A., Stashevski Z., Gavrilenko T.A. Nomenclatural standards and genetic passports of potato cultivars bred by the Tatar Research Institute of Agriculture «Kazan Scientific Center of the Russian Academy of Sciences». Plant Biotechnology and Breeding. 2020;3(3):55-67. (In Russ.) https://doi.org/10.30901/2658-6266-2020-3-o4

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