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The use of molecular cytogenetic methods in the investigation of distant potato hybrids

https://doi.org/10.30901/2658-6266-2020-2-o4

Abstract

This paper reviews the results of studies of interspecies hybridization, polyploidization, as well as phylogenetic relationships of Solanum species and members of closely related taxa by such molecular cytogenetic techniques as genomic (GISH) and fluorescent (FISH) DNA-DNA in situ hybridization. The latter was used to determine the genomic composition and origin of wild species of the Petota section, while the FISH technique was used for detecting intergenomic collinearity. The combination of these two types of research made possible a comparative analysis of karyotypes and genomes, thus allowing a better understanding of the meiotic interchromosomal interactions in hybrids. This review primarily focuses on the studies of wild allopolyploid potato species and artificially created intergeneric and interspecific hybrids of the genus Solanum and their offspring.

About the Author

Т.  О. Makarova
N.I. Vavilov All-Russian Institute of Plant Genetic Resources (VIR)
Russian Federation
42, 44 Bolshaya Morskaya Street, St. Petersburg 190000


References

1. Achenbach U.C., Tang X., Ballvora A., de Jong H., Gebhardt C. Comparison of the chromosome maps around a resistance hot spot on chromosome 5 of potato and tomato using BAC-FISH painting. Genome. 2010;53:103-110. DOI: 10.1139/G09-086

2. Ali S.N.H., Ramanna M.S., Jacobsen E., Visser R.G.F. Establishment of a complete series of a monosomic tomato chromosome addition lines in the cultivated potato using RFLP and GISH analyses. Theoretical and Applied Genetics. 2001;103:687-695. DOI: 10.1007/s001220100652

3. Badaeva E.D., Salina E.A. Genome structure and chromosome analysis in plants. Vavilovskii Zhurnal Genetiki i Selektsii = Vavilov Journal of Genetics and Breeding. 2013;17(4/2):1017-1043 [in Russian]

4. Chase M.W., Knapp S., Cox A.V., Clarkson J.J., Butsko Y., Joseph J., Savolainen V., Parokonny A.S. Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae). Annals of Botany. 2003; 92(1):107-27. DOI: 10.1093/aob/mcg087

5. Collonnier C., Fock I., Mariska I., Servaes A., Vedel F., Siljak-Yakovlev S., Souvannavong V., Sihachakr D. GISH confirmation of somatic hybrids between Solanum melongena and S. torvum: assessment of resistance to both fungal and bacterial wilts. Plant Physiology and Biochemistry. 2003;41:459-470. DOI: 10.1016/S0981-9428(03)00054-8

6. Dong F., Novy R.G., Helgeson J.P., Jiang J. Cytological characterization of potato – Solanum etuberosum somatic hybrids and their backcross progenies by genomic in situ hybridization. Genome. 1999;42(5):987-992. DOI: 10.1139/g99-037

7. Dong F., Song J., Naess S.K., Helgeson J.P., Gebhardt C., Jiang J. Development and applications of a set of chromosome-specific cytogenetic DNA markers in potato. Theoretical and Applied Genetics. 2000;101(7):1001-1007. DOI: 10.1007/s001220051573

8. Dong F., McGrath J.M., Helgeson J.P., Jiang J. The genetic identity of alien chromosomes in potato breeding lines revealed by sequential GISH and FISH analyses using chromosome-specific cytogenetic DNA markers. Genome. 2001;44(4):729-734. DOI: 10.1139/gen-44-4-729

9. Dong F., Tek A.L., Frasca A.B.L., McGrath J.M., Wielgus S.M., Helgeson J.P., Jiang J. Development and characterization of potato-Solanum brevidens chromosomal addition/substitution lines. Cytogenetic and Genome Research. 2005;109(5):368-372. DOI: 10.1159/000082421

10. Escalante A., Imanishi S., Hossain M., Ohmido N., Fukui K. RFLP analysis and genomic in situ hybridization (GISH) in somatic hybrids and their progeny between Lycopersicon esculentum and Solanum lycopersicoides. Theoretical and Applied Genetics. 1998;96(6):719-726. DOI: 10.1007/s001220050794

11. Gaiero P., Mazzella C., Vilaró F., Speranza P., de Jong H. Pairing analysis and in situ hybridisation reveal autopolyploid-like behaviour in Solanum commersonii × S. tuberosum (potato) interspecific hybrids. Euphytica. 2017;213(7):137-144. DOI: 10.1007/s10681-017-1922-4

12. Garriga-Calderé F., Huigen D.J, Filotico F., Jacobsen E., Ramanna M.S. Identification of alien chromosomes through GISH and RFLP analysis and the potential for establishing potato lines with monosomic additions of tomato chromosomes. Genome. 1997;40(5):666-673. DOI: 10.1139/g97-088

13. Garriga-Calderé F., Huigen D.J., Angrisano A., Jacobsen E., Ramanna M.S. Transmission of alien tomato chromosomes from BC 1 to BC 2 progenies derived from backcrossing potato (+) tomato fusion hybrids to potato: the selection of single additions for seven different tomato chromosomes. Theoretical and Applied Genetics. 1998;96(2):155-163. DOI: 10.1007/s001220050722

14. Garriga-Calderé F., Huigen D.J., Jacobsen E., Ramanna M.S. Prospects for introgressing tomato chromosomes into the potato genome: An assessment through GISH analysis. Genome. 1999;42(2):282-288. DOI: 10.1139/gen-42-2-282

15. Gavrilenko T., Thieme R., Rokka V.-M. Cytogenetic analysis of Lycopersicon esculentum (+) Solanum etuberosum somatic hybrids and their androgenetic regenerants. Theoretical and Applied Genetics. 2001;103(2): 231-239. DOI: 10.1007/s001220100626

16. Gavrilenko T., Larkka J., Pehu E, Rokka V.-M. Identification of mitotic chromosomes of tuberous and non-tuberous Solanum species (Solanum tuberosum and Solanum brevidens) by GISH in their interspecific hybrids. Genome. 2002;45(8):442-449. DOI: 10.1139/g01-136

17. Gavrilenko T., Thieme R., Heimbach U., Thieme Th. Fertile somatic hybrids of Solanum etuberosum (+) dihaploid Solanum tuberosum and their backcrossing progenies: relationships of genome dosage with tuber development and resistance to potato virus Y. Euphytica. 2003;131(3):323-332. DOI: 10.1023/A:1024041104170

18. Gavrilenko T. Potato cytogenetics. In: D. Vreugdenhil, J. Bradshaw, C. Gebhardt, F. Govers, D.K.L. MacKerron, M.A. Taylor, H. Ross (eds). Potato Biology and Biotechnology: Advances and Perspectives. Oxford; Amsterdam: Elsevier ; 2007. p.203-216.

19. Gavrilenko T. Application of molecular cytogenetics in fundamental and applied research of potato. In: J.M. Bradeen, C. Kole (eds). Genetics, Genomics and Breeding of Potato. Enfield, NH, USA: Science Publishers; 2011. p.184-206. DOI: 10.1201/b10881-10

20. Gavrilenko T.A., Pendinen G.I., Rokka V.-M., Antonova O.Y., Thieme R. Intrgenomic chromosome pairing in allohaploid hybrids of genus Solanum. Vavilovskii Zhurnal Genetiki i Selektsii = Vavilov Journal of Genetics and Breeding. 2014;18(4/1):660-671. [in Russian]

21. Hawkes J.G. The Potato: Evolution, Biodiversity and Genetic Resources. Washington, D.C.: Smithsonian Institution Press; 1990. Available from: oclc:record:1150961186 [accessed October 14, 2020].

22. Hawkes J.G. Origins of cultivated potatoes and species relationships. In: Potato Genetics. Wallingford: CAB International; 1994. p.3-42.

23. He L., Liu J., Torres G.A., Zhang H., Jiming J., Xie C. Interstitial telomeric repeats are enriched in the centromeres of chromosomes in Solanum species. Chromosome Research. 2012;21(1):5-13. DOI: 10.1007/s10577-012-9332-x

24. Hijmans R.J., Gavrilenko T., Stephenson S., Bamberg J., Salas A., Spooner D.M. Geographical and environmental range expansion through polyploidy in wild potatoes (Solanum section Petota). Global Ecology and Biogeography. 2007;16(4):485-495. DOI: 10.1111/j.1466-8238.2007.00308.x

25. Horsman K., Gavrilenko T., Bergervoet M., Huigen D.J., Joe A.T.W., Jacobsen E. Alteration of the genomic composition of Solanum nigrum (+) potato backcross derivatives by somatic hybridization: selection of fusion hybrids by DNA measurements and GISH. Plant Breeding. 2001;120:201-207. DOI: 10.1046/j.1439-0523.2001.00591.x

26. Hussein A., Katsuhiko K. Fluorescence in situ hybridization and genomic in situ hybridization to identify the parental genomes in the intergenic hybrid between Chrysanthemum japonicum and Nipponanthemum nipponicum. Chromosome Botany. 2006;1(1):7-11. DOI: 10.3199/iscb.1.7

27. Hussein A., Katsuhiko K. Genome Mutation Revealed by Artificial Hybridization between Chrysanthemum yoshinaganthum and Chrysanthemum vestitum Assessed by FISH and GISH. Journal of Botany. 2012;ID 480310(8). DOI: 10.1155/2012/480310

28. Iovene M., Savarese S., Cardi T., Frusciante L., Scotti N., Simon P.W., Carputo D. Nuclear and cytoplasmic genome composition of Solanum bulbocastanum (+) S. tuberosum somatic hybrids. Genome. 2007;50(5):443-450. DOI: 10.1139/g07-024

29. Iovene M., Welgus S.M., Simon P.W., Buell R., Jiang J. Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics. 2008;180(3):1307-1317. DOI: 10.1534/genetics.108.093179

30. Irikura Y. Cytogenetic studies on the haploid plants of tuber-bearing Solanum species. II. Cytogenetic investigations on haploid plants and interspecific hybrids by utilizing haploidy. Research Bulletin of the Hokkaido National Agricultural Experiment Station. 1976;115:1-80.

31. Jacobsen E., Daniel M.K., Bergervoet J.E.M., Huigen D.J., Ramanna M.S. The first and second backcross progeny of the intergeneric fusion hybrids of potato and tomato after crossing with potato. Theoretical and Applied Genetics. 1994;88:181-1 86. DOI: 10.1007/BF00225895

32. Jacobsen E., de Jong J.H., Kamstra S.A., van den Berg P.M.M.M., Ramanna M.S. Genomic in situ hybridization (GISH) and RFLP analysis for the identification of alien chromosomes in the back-cross progeny of potato (+) tomato fusion hybrids. Heredity. 1996;74(3):250-257. DOI: 10.1038/hdy.1995.38

33. Jeridi M., Bakry F., Escoute J., Fondi E., Carreel F., Ferchichi A., D’Hont A., Rodier-Goud M. Homoeologous chromosome pairing between the A and B genomes of Musa spp. revealed by genomic in situ hybridization. Annals of Botany. 2011;108(5):975-981. DOI: 10.1093/aob/mcr207

34. Ji Y., Pertuzé R., Chetelat R.T. Genome differentiation by GISH in interspecific and intergeneric hybrids of tomato and related nightshades. Chromosome Research. 2004;12:107-116. DOI: 10.1023/B:CHRO.0000013162.33200.61

35. Ji Y., Chetelat R.T. GISH analysis of meiotic chromosome pairing in Solanum lycopersicoides introgression lines of cultivated tomato. Genome. 2007;50(9):825-33. DOI: 10.1139/g07-069

36. Kulawiec M., Tagashira N., Bartoszewski G., Kuc D., Sniezko R., Malepszy S. Chromosome number variation in somatic hybrids between transgenic tomato (Lycopersicon esculentum) and Solanum lycopersicoides. Journal of applied genetics. 2003;44(4):431-447.

37. Leitch A.R., Schwarzacher T., Jacson D., Leitch I.J. In situ hybridization: a practical guide. Oxford: Bios Scientic Publishers Ltd.; 1994.

38. Lim S.J., Lee S.S., Bang J.W. Karyotype and genomic in situ hybridization pattern in xBrassicoraphanus, an intergeneric hybrid between Brassica campestris ssp. pekinensis and Raphanus sativus. Plant Biotechnology Reports. 2012;6:107-112. DOI: 10.1007/s11816-011-0202-3

39. Lou Q., Iovene M., Spooner D.M., Buell C.R., Jiming J. Evolution of chromosome 6 of Solanum species revealed by comparative fluorescence in situ hybridization mapping. Chromosoma. 2010;119:435-442. DOI: 10.1007/s00412-010-0269-6

40. M de Boer J., Datema E., Tang X., Borm T.J.A., Bakker E.H., van Eck H.J., van Ham R.C.H.J., de Jong H., Visser R.G.F., Bachem C.W.B. Homologues of potato chromosome 5 show variable collinearity in the euchromatin, but dramatic absence of sequence similarity in the pericentromeric heterochromatin. BMC Genomics. 2015;16(1):374. DOI: 10.1186/s12864-015-1578-1.

41. Matsubayashi M. Phylogenetic relationships in the potato and its related species. In: Tsuchiya T. and Gupta PK (eds.). Chromosome engineering in plants: genetics, breeding and evolution, part B. Elsevier, Amsterdam. 1991;2:93-118. DOI: 10.1016/B978-0-444-88260-8.50011-2

42. McGrath J.M., Wielgus S.M., Uchytil T.F., Kim-Lee H., Haberlach G.T., Williams C.E., Helgeson J.P. Recombination of Solanum brevidens chromosomes in the second backcross generation from a somatic hybrid with S. tuberosum. Theoretical and Applied Genetics. 1994;88(8):917-924. DOI: 10.1007/BF00220797

43. McGrath J.M., Wielgus S.M., Helgeson J.P. Segregation and recombination of Solanum brevidens synteny groups in progeny of somatic hybrids with S. tuberosum: intragenomic equals or exceeds intergenomic recombination. Genetics. 1996;142(4):1335-1348.

44. Molnár-Láng M., Linc G., Logojan A., Sutka J. Production and meiotic pairing behaviour of new hybrids of winter wheat (Triticum aestivum) x winter barley (Hordeum vulgare). Genome. 2000;43(6):1045-54. DOI: 10.1139/gen-43-6-1045

45. Parokonny A.S., Marshall J.A., Bennett M.D., Cocking E.C., Davey M.R., Power J.B. Homoeologous pairing and recombination in backcross derivatives of tomato somatic hybrids [Lycopersicon esculentum (+) L. peruvianum]. Theoretical and Applied Genetics. 1997;94(10):713-723. DOI: 10.1007/s001220050470

46. Pendinen G., Gavrilenko T., Jiang J., Spooner D.M. Allopolyploid speciation of the Mexican tetraploid potato species Solanum stoloniferum and S. hjertingii revealed by genomic in situ hybridization. Genome. 2008;51(9):714-220. DOI: 10.1139/G08-052

47. Pendinen G., Spooner D.M., Jiang J., Gavrilenko T. Genomic in situ hybridization reveals both autoand allopolyploid origins of different North and Central American hexaploid potato (Solanum sect. Petota) species. Genome. 2012;55(6):407–415. DOI: 10.1139/g2012-027

48. Peters S.A., Bargsten J.W., Szinay D., van de Belt J., Visser R.G.F., Bai Y., de Jong H. Structural homology in the Solanaceae: analysis of genomic regions in support of synteny studies in tomato, potato and pepper. The Plant Journal. 2012;71(6):602-614. DOI: 10.1111/j.1365-313X.2012.05012.x

49. Rakosy-Tican E., Thieme R., Konig J., Nachtigall M., Hammann T., Denes T.-E., Kruppa K., Molnar-Lang M. Introgression of two broad-spectrum late blight resistance genes, Rpi-blb1 and Rpi-blb3, from Solanum bulbocastanum dun plus Rase-specific R genes into potato pre-breeding lines. Frontiers in Plant Science. 2020;11:699. DOI: 10.3389/fpls.2020.00699

50. Ramzan F., Younis A., Lim K.-B. Application of genomic in situ hybridization in horticultural science. International Journal of Genomics. 2017:ID 7561909. DOI: 10.1155/2017/7561909

51. Rodrigo B.-G., Van Silfhout A.A., Visser R.G.F., Munikote S. Ramanna, Van Tuyl J.M. Progenies of allotriploids of Oriental×Asiatic lilies (Lilium) examined by GISH analysis. Euphytica. 2006;151:243-250. DOI: 10.1007/s10681-006-9148-x

52. Rokka V.-M., Lapitan N.L.V., Knudson D.L., Pehu E. Fluorescence in situ hybridization of potato somatohaploids and their somatic hybrid donors using two Solanum brevidens specific sequences. Agricultural and Food Science. 1998;7(1):31-38. DOI: 10.23986/afsci.72853

53. Rybin V.A. Karyological investigation on some wild growing and indigenous cultivated potatoes of America. Bulletin of applied botany, of genetics and plant breeding. 1929;20:655-720. [in Russian]

54. Rybin V.A. Cytological investigation of the South American cultivated and wild potatoes, and its significance for plant breeding. Bulletin of applied botany, of genetics and plant breeding. Ser. 2. 1933;2:3- 100. [in Russian]

55. Schwarzacher T., Leitch A.R., Bennett M.D., Heslop-Harrison J.S. In situ localization of parental genomes in a wide hybrid. Annals of Botany. 1989;64(3):315-324. DOI: 10.1093/oxfordjournals.aob.a087847

56. Silva G.S., Souza M.M. Genomic in situ hybridization in plants. Genetics and molecular research. 2013;12(3):2953-2965. DOI: 10.4238/2013.August.12.11

57. Song J., Dong F., Jiang J. Construction of a bacterial artificial chromosome (BAC) library for potato molecular cytogenetics research. Genome. 2000;43(1):199–204. DOI: 10.1139/gen-43-1-199

58. Spooner D.M., Sytsma K.J. Reexamination of series relationships of Mexican and Central American wild potatoes (Solanum sect. Petota): evidence from chloroplast DNA restriction site variation. Systematic Botany. 1992;17(3):432-448.

59. Spooner D.M., Van Den Berg R.G., Miller J.T. Species and series boundaries of Solanum series Longipedicellata (Solanaceae) and phonetically similar species in ser. Demissa and ser. Tuberosa: implications for a practical taxonomy of section Petota. American Journal of Botany. 2000;88(1):113-130.

60. Spooner D.M., Rodríguez F., Polgár Z., Ballard H.E., Jansky S.H. Genomic origins of potato polyploids: GBSSI gene sequencing data. Crop Science. 2008;48:27-36. DOI: 10.2135/cropsci2007.09.0504tpg

61. Spooner D.M., Ghislain M., Simon R., Jansky S.H., Gavrilenko T. Systematics, diversity, genetics, and evolution of wild and cultivated potatoes. The Botanical Review. 2014;80(4):283-383. DOI: 10.1007/s12229-014-9146-y

62. Stupar R.M., Song J., Tek A.L., Cheng Z., Dong F., Jiming J. Highly condensed potato pericentromeric heterochromatin contains rDNA-related tandem repeats. Genetics. 2002;162(3):1435-1444. Szinay D., Wijnker E., van den Berg R., Visser R.G.F., de Jong H.,

63. Bai Y. Chromosome evolution in Solanum traced by cross-species BAC-FISH. New Phytologist. 2012;195:688-698. DOI: 10.1111/j.1469-8137.2012.04195.x

64. Tang X., de Boer J.M., van Eck H.J., Bachem C., Visser R.G., de Jong H. Assignment of genetic linkage maps to diploid Solanum tuberosum pachytene chromosomes by BAC-FISH technology. Chromosome Research. 2009;17(7):899-915. DOI: 10.1007/s10577-009-9077-3

65. Tarwacka J., Polkowska-Kowalczyk L., Kolano B., Śliwka J., Wielgat B. Interspecific somatic hybrids Solanum villosum (+) S. tuberosum, resistant to Phytophthora infestans. Journal of plant physiology. 2013;170(17):1541-8. DOI: 10.1016/j.jplph.2013.06.013

66. Yao X., Ge X., Chen J., Li Z. Intra- and intergenomic relationships in interspecific hybrids between Brassica (B. rapa, B. napus) and a wild species B. maurorum as revealed by genomic in situ hybridization (GISH). Euphytica. 2010;173:113-120. DOI: 10.1007/s10681-010-0131-1

67. Zwierzykowski Z., Zwierzykowska E., Taciak M., Jones N., Kosmala A., Krajewski P. Chromosome pairing in allotetraploid hybrids of Festuca pratensis × Lolium perenne revealed by genomic in situ hybridization (GISH). Chromosome Research. 2008;16(10):575-585. DOI: 10.1007/s10577-008-1198-6


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Makarova Т.О. The use of molecular cytogenetic methods in the investigation of distant potato hybrids. Plant Biotechnology and Breeding. 2020;3(2):30-38. (In Russ.) https://doi.org/10.30901/2658-6266-2020-2-o4

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